"A Certain Magical Index" is set in a world where science and magic coexist, with the story primarily unfolding in Academy City, a technologically advanced metropolis where students develop supernatural abilities known as "esper powers." The narrative centers on Toma Kamijo, a high school student with a unique ability called the "Imagine Breaker," which nullifies any supernatural power, whether magical or esper-based, with his right hand. Despite this ability, Toma is classified as a Level 0 esper, the lowest rank, making him an underdog in a city dominated by powerful espers.
The plot begins when Toma encounters Index, a young nun from the Church of England who possesses the "Index Librorum Prohibitorum," a vast repository of 103,000 forbidden magical texts stored in her memory. Index is pursued by magicians who seek to exploit her knowledge, and Toma becomes her protector. As the story progresses, Toma finds himself entangled in conflicts between the scientific and magical factions, often serving as a mediator or unwilling participant in their struggles.
The series explores the tension between science and magic, with Academy City representing the pinnacle of scientific advancement and the magical world rooted in ancient traditions and secret organizations. Toma frequently encounters powerful espers, such as Mikoto Misaka, a Level 5 electromaster, and Accelerator, the top-ranked Level 5 esper with the ability to manipulate vectors. These characters play significant roles in the narrative, with Mikoto becoming a recurring ally and Accelerator evolving from a antagonist to a complex anti-hero.
The magical side of the story introduces various factions, including the Roman Catholic Church, the Anglican Church, and independent magicians, each with their own agendas. Toma's involvement with Index draws him into conflicts with these groups, often forcing him to confront powerful adversaries and uncover hidden truths about the world's balance of power. The series delves into themes of morality, the consequences of power, and the blurred lines between good and evil.
As the story unfolds, Toma's relationships with Index, Mikoto, and other characters deepen, revealing their personal struggles and motivations. The narrative is marked by intricate world-building, with detailed explanations of both esper abilities and magical systems. The series balances action, mystery, and character development, creating a multifaceted story that appeals to fans of both science fiction and fantasy genres.